Background

Questioninfo icon

What is the source of COVID-19 (SARS-CoV-2)?

01 Oct, 2020

Answerinfo icon

The virus was developed during

gain-of-function
research and was released by accident.

(89% probability)

Backgroundinfo icon

When a novel coronavirus was first identified in late 2019, the assumption was that, like most epidemics, it was of a zoonotic source. A few studies, including one published in the prestigious Nature magazine, concluded that the virus is not a laboratory construct.

Today, claiming a non-zoonotic origin is widely considered a conspiracy theory, and indeed many such claims are easily refutable without requiring probabilistic inference.

However, the possibility of a lab escape does require serious examination, especially when considering the proximity of the source to a major coronavirus lab and several unusual findings in the genome of SARS-CoV-2. Due to the complexities of weighing an unlikely lab origin against findings that are unlikely for a zoonotic source, a probabilistic analysis is needed.

This analysis is part of the Rootclaim $100,000 challenge, open to anyone who disagrees with our calculated conclusion. Read more.

Hypotheses Consideredinfo icon

Calculated Resultsinfo icon

Calculated Resultsinfo icon

1

89%
Lab escape:

The virus was developed during

gain-of-function
research and was released by accident.

89%

2

4.5%
Bioweapon:

The virus was genetically engineered as a bioweapon and was deliberately released.

4.5%

3

3.2%
Zoonotic collection:

The virus evolved in nature, and was contracted by virus researchers.

3.2%

4

3.2%
Zoonotic:

The virus evolved in nature and was transmitted to humans

zoonotically
.

3.2%

Starting Pointinfo icon

Initial Probabilities

Name
Initial Likelihoods
info icon
Zoonotic
78%
Lab escape
0.7%
Bioweapon
16%
Zoonotic collection
6%

There have been many more viruses introduced to humanity

zoonotically
than through lab failures. Specifically, there were several major pandemics involving novel coronaviruses from natural origin in recent years. Although there have been no known outbreaks involving any novel viruses (coronavirus or otherwise) that came from research, there have been cases of lab leaks that were caught before causing widespread infections, including one lab leak (of a previously known virus) that led to secondary infections. There are also no known cases of a virus being released deliberately in modern history.

Before examining the specific evidence, the initial estimate of the probabilities of Zoonotic : Zoonotic collection : Bioweapon : Lab escape (based on their respective likelihood of incidents per year) is 78% : 6% : 16% : 0.6%.

Name
Initial Likelihoods
info icon
Zoonotic
78%
Lab escape
0.7%
Bioweapon
16%
Zoonotic collection
6%

Evidenceinfo icon

Effectinfo icon

Contagion and mortality

Name

Effectinfo icon

Updated Likelihoods

Zoonotic
-
91%
Lab escape
-
0.8%
Bioweapon
÷10
1.8%
Zoonotic collection
-
7%

COVID-19 is more contagious than the typical flu, but not as fatal as recent viruses like MERS or SARS. Overall, it is not particularly well-suited as a traditional bioweapon, and COVID-19 broke out during a relatively peaceful time. This indicates that, if it was used as a bioweapon, it would probably not be released as a method of killing people but for a different purpose such as disrupting the world economy.

Name

Effectinfo icon

Updated Likelihoods

Zoonotic
-
91%
Lab escape
-
0.8%
Bioweapon
÷10
1.8%
Zoonotic collection
-
7%

Outbreak location: Wuhan

Name

Effectinfo icon

Updated Likelihoods

Zoonotic
÷20
51%
Lab escape
-
9%
Bioweapon
÷15
1.4%
Zoonotic collection
÷2
38%

The COVID-19 outbreak was first recorded in Wuhan, one of the larger cities in China. Large cities are often the initial breakout sites of zoonotic pandemics, but in that sense Wuhan is no more likely than any other city. It also isn't a particularly desirable target for releasing a bioweapon. 

However, Wuhan stands out for housing the Wuhan Institute of Virology, one of only a few labs engaged in

gain-of-function
research.

Name

Effectinfo icon

Updated Likelihoods

Zoonotic
÷20
51%
Lab escape
-
9%
Bioweapon
÷15
1.4%
Zoonotic collection
÷2
38%

Virus sources near Wuhan

Name

Effectinfo icon

Updated Likelihoods

Zoonotic
-
68%
Lab escape
÷2
6%
Bioweapon
÷2
0.9%
Zoonotic collection
÷2
25%

There are no obvious natural sources for COVID-19 in the Wuhan area (Hubei province). The most similar coronavirus is found among bats that don’t live nearby, and scientists have not been able to pinpoint the exact point where SARS-CoV-2 transferred to humans. On the other hand, the initial cluster of cases in the Wuhan wet market is significantly more likely if the virus originated

zoonotically
.

Name

Effectinfo icon

Updated Likelihoods

Zoonotic
-
68%
Lab escape
÷2
6%
Bioweapon
÷2
0.9%
Zoonotic collection
÷2
25%

Chimera

Name

Effectinfo icon

Updated Likelihoods

Zoonotic
÷8
46%
Lab escape
-
32%
Bioweapon
-
4.9%
Zoonotic collection
÷8
17%

SARS-CoV-2 has parts in common with two different viruses, but those individual viruses do not share these similarities with each other, indicating it is a

chimera
. Such chimeras are found both in nature and in labs that conduct
gain-of-function
research. However, this specific
chimera
seems less likely to combine in nature, while the
WIV
is known to have access to both viruses.

Name

Effectinfo icon

Updated Likelihoods

Zoonotic
÷8
46%
Lab escape
-
32%
Bioweapon
-
4.9%
Zoonotic collection
÷8
17%

Furin cleavage

Name

Effectinfo icon

Updated Likelihoods

Zoonotic
÷8
13%
Lab escape
-
72%
Bioweapon
-
11%
Zoonotic collection
÷8
4.7%

SARS-CoV-2 has a

furin cleavage site
- an amino acid sequence that causes the protease furin to cut the virus in a way that facilitates its entry into cells. This feature is missing in related coronaviruses, and its placement in the genetic code looks like an insertion rather than a mutation, making it less likely to develop in nature.

Name

Effectinfo icon

Updated Likelihoods

Zoonotic
÷8
13%
Lab escape
-
72%
Bioweapon
-
11%
Zoonotic collection
÷8
4.7%

Already well adapted

Name

Effectinfo icon

Updated Likelihoods

Zoonotic
-
7%
Lab escape
×2
79%
Bioweapon
×2
12%
Zoonotic collection
-
2.6%

It appears that there was one index case of COVID-19, rather than multiple jumps from nature to humans, as was the case in many other pandemics. Additionally, SARS-CoV-2 was already well adapted for human infection from the first known cases.

Name

Effectinfo icon

Updated Likelihoods

Zoonotic
-
7%
Lab escape
×2
79%
Bioweapon
×2
12%
Zoonotic collection
-
2.6%

WIV lab procedures

Name

Effectinfo icon

Updated Likelihoods

Zoonotic
-
3.8%
Lab escape
×2
87%
Bioweapon
-
7%
Zoonotic collection
×2
2.8%

There is some evidence regarding lax security and procedures at the Wuhan Institute of Virology, including other coronaviruses that seem to have escaped the confines of the lab.

Name

Effectinfo icon

Updated Likelihoods

Zoonotic
-
3.8%
Lab escape
×2
87%
Bioweapon
-
7%
Zoonotic collection
×2
2.8%

Infections at WIV

Name

Effectinfo icon

Updated Likelihoods

Zoonotic
×1
3.8%
Lab escape
×1
87%
Bioweapon
×1
7%
Zoonotic collection
×1
2.8%

A U.S. intelligence report showed that three researchers from the Wuhan Institute of Virology sought hospital care in November 2019, though the exact illness is not known. However, the

WIV
reported no COVID-19 infections or serological evidence of previous COVID-19 infections among their researchers.

Name

Effectinfo icon

Updated Likelihoods

Zoonotic
×1
3.8%
Lab escape
×1
87%
Bioweapon
×1
7%
Zoonotic collection
×1
2.8%

WIV disassociation

Name

Effectinfo icon

Updated Likelihoods

Zoonotic
-
2%
Lab escape
×2
92%
Bioweapon
-
3.5%
Zoonotic collection
×1.5
2.3%

The

WIV
explicitly stated that they were not working on SARS-CoV-2 prior to the outbreak.

However, on December 30, when Dr. Shi Zheng-Li was informed of the COVID-19 outbreak, changes were made to her bat virus database, making it look like she was trying to dissociate her lab's research from the COVID-19 outbreak.

Then, in January 2020,

WIV
researchers published a paper claiming to have found a previously unknown coronavirus named RaTG13 that was a 96% match with SARS-CoV-2.

But RaTG13 is a new name given to BtCoV/4991, a coronavirus that the

WIV
discovered (along with many other viruses) when they examined a bat cave after six miners contracted a pneumonia-like disease and three died.

This, and other anomalies surrounding

WIV
’s handling of RaTG13, are indicative of attempts to minimize
WIV
involvement.

Name

Effectinfo icon

Updated Likelihoods

Zoonotic
-
2%
Lab escape
×2
92%
Bioweapon
-
3.5%
Zoonotic collection
×1.5
2.3%

Chinese response

Name

Effectinfo icon

Updated Likelihoods

Zoonotic
-
1.4%
Lab escape
×1.5
94%
Bioweapon
-
2.4%
Zoonotic collection
×1.5
2.3%

The official Chinese response was not transparent, though not particularly surprising even if the virus developed

zoonotically
. They restricted WHO access, destroyed samples, and withheld information, which might be construed as an attempt to hide evidence that could be used to blame China for COVID-19. Additionally, they sent Major General Chen Wei from the Academy of Military Medical Sciences to oversee COVID-19 efforts at the
WIV
, which could potentially indicate the involvement of a bioweapon, but it is probably immaterial.

Name

Effectinfo icon

Updated Likelihoods

Zoonotic
-
1.4%
Lab escape
×1.5
94%
Bioweapon
-
2.4%
Zoonotic collection
×1.5
2.3%

Missing evidence

Name

Effectinfo icon

Updated Likelihoods

Zoonotic
-
3.2%
Lab escape
÷2.4
89%
Bioweapon
÷1.2
4.5%
Zoonotic collection
÷1.7
3.2%

If the COVID-19 pandemic was the result of a virus developed in a lab - and got out either as the result of an accident or released on purpose as a bioweapon - there are certain pieces of evidence that could have emerged by now, but so far did not. 

 

  1. No whistleblowers have given first hand testimony or exposed evidence of any link between COVID-19 and a lab, even though some doctors and researchers have spoken out about other incidents where they believed that China mishandled information regarding COVID-19.

  2. There were no published records of SARS-CoV-2 in virus databases or research grants.

  3. Wuhan was not immediately cordoned off when the first cases appeared.

Name

Effectinfo icon

Updated Likelihoods

Zoonotic
-
3.2%
Lab escape
÷2.4
89%
Bioweapon
÷1.2
4.5%
Zoonotic collection
÷1.7
3.2%

Discussioninfo icon

userIcon
user icon
mbw
Mar 28, 2024 at 2:05 PM
Saar- In the debate I think you had a table of cities with ascertained wet-market outbreaks. Is that posted somewhere? I noticed that Peter countered it with "cold chain sources" claims, apparently in all seriousness.
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Rootclaim
Apr 9, 2024 at 8:44 AM
This is the map of the cities: https://postimg.cc/PPn5RMYM How we created this map: To create the map, we started with Wuhan's 1.5% population, allocating 41% as wildlife consumers due to the Huanan Seafood Market's prominence. Adjusting for Wuhan's location not being in South China, where wildlife consumption was higher, brought it down to 0.2%. It became a key reference point because of Guangzhou's high consumption rates and its association with the first SARS1 spillover. Despite the initial oversight of not factoring in the higher likelihood of restaurant spillover, adjustments were made based on past experiences with SARS1. The resulting map illustrated varying wildlife consumption levels across China, focusing on regions like Gu
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Dan Sirotkin
Jan 6, 2024 at 11:09 PM
Thanks for hosting this debate, but you're missing the most viable possibility: SARS-CoV-2 is the result of a reverting LAV that deattenuated faster than expected. So it's not a leak, it's exactly what happened in 1977 with H1N1 - a serially passaged LAV reverted faster than expected and sparked a pandemic. If you google "Dan Sirotkin" you'll find - among other things - the links to the two peer-reviewed papers about a lab origin for this virus that I co-authored, as well as my Substack which made the LAV argument back in April 2021.
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jgarcin
Jan 27, 2024 at 1:37 AM
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ChristianKl
Oct 19, 2023 at 11:53 AM
Saying "There were no published records of SARS-CoV-2 in virus databases or research grants" but not speaking about the Wuhan Institute taking down their virus database seems to me a bit strange. The whole decision of the WIV to take down the database that was funded with international research dollars should be one item of evidence for the lab leak hypnothesis. Taking down a database that exists for purposes like to be able to better develop coronavirus vaccines and not make them available in a coronavirus pandemic, seems to me like a strong piece of evidence. For context, the database was taken down in September 2019 (https://www.europarl.europa.eu/doceo/document/E-9-2022-000608_EN.html)
user icon
Margy4398
Jul 7, 2023 at 12:11 AM
I think the premise this is a peaceful time on world history is incorrect. For several years, we have been in the prelude of a new type of global warfare , and some argue we are already in WW3. C19 is not a traditional bioweapon with a high kill rate. It is far more subtle. C19 has ended globalisation, spiked inflation, broken supply chains, weakened economies, bitterly divided western societies, eroded trust in government & institutions, disrupted kids educations… It’s effects will be far more lasting than “Spanish flu” - despite a much lower IFR
user avatar
Gary Mulder
Jul 4, 2023 at 12:21 PM
A key assumption in Bayesian reasoning is that the pieces of evidence are independent, meaning the outcome of one piece of evidence does not influence the outcome of another. In reality, especially in complex scenarios like the origin of a virus, this assumption may not hold true. Evidence can often be interconnected or have dependencies. For example, the evidence about the virus's genetic makeup could potentially be related to evidence about lab procedures at the Wuhan Institute of Virology. If these pieces of evidence are not truly independent, then treating them as such in the analysis could potentially lead to inaccuracies in the calculated probabilities. How are you accounting for this in your Bayesian updating?
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Rootclaim
Jul 16, 2023 at 6:34 AM
Our methodology accounts for interconnected and dependent evidence by sorting information into groups and quantifying their impact on each hypothesis. This ensures accurate calculation of final probabilities using proven mathematical formulas. More information can be found on the "How Rootclaim Works" tab.
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mbw
Jul 7, 2023 at 5:41 PM
That's an assumption in the simplest Bayesian reasoning, as used here. It's not at all a general Bayesian assumption. Here they've tried to carve up the evidence into reasonably independent factors. Obviously that's not perfect but then the factors themselves are already pretty rough, so it doesn't add much to the uncertainties. Personally, I'd have divided things a little differently, lumping the existence of an FCS in with the original city being Wuhan amking that location factor bigger, and leaving the detailed properties of the FCS as a separate factor. That wouldn't change the net result too much., a little toward LL. On the specific clustering within Wuhan, the early social media data actually cluster near WIV rather than HSM, so I'd leave out that small factor favoring zoo, or maybe even invert it. Thus 89% may be low. Where the large prior for bioweapon comes from is unclear to me. It looks way too high.